Welcome to PyCellID’s documentation!

Contents:

• 1. Installation
  • 1.1. Development
  • 1.2. Initialization
• 2. Quick start
  • 2.1. Project Structure
    • 2.1.1. Resource helpers
  • 2.2. Load your data
    • 2.2.1. Load your data frame
    • 2.2.2. From Cell-ID output
  • 2.3. Inspect your data
    • 2.3.1. Using Cell-ID features
  • 2.4. Cell-ID together with PyCellID provide 5 categories of calculated variables:
    • 2.4.1. View your images
    • 2.4.2. Use CellsPloter to inspect images
• 3. Basic examples
  • 3.1. Prerequisites
  • 3.2. CellData object instantiation
  • 3.3. Inspection of data structure
  • 3.4. Filtering data
  • 3.5. CellsPloter
• 4. License
• 5. PyCellID Changelog
  • 5.1. Version (0.2.0)
  • 5.2. Version 0.1.1

API Reference:

• 1. pycellid
  • 1.1. pycellid package
    • 1.1.1. Submodules
    • 1.1.2. pycellid.core module
    • 1.1.3. pycellid.images module
    • 1.1.4. pycellid.io module
    • 1.1.5. Module contents

Indices and tables

• Index

• Module Index

• Search Page